SIMULATION METHOD REVIEW

Choose a method with its limits in view

Only compatible, implemented methods are selectable. Planning records settings and provenance; it does not start a model run.

Algorithms

Classical RK4: Available
deterministic-ode; nendera-rk4@1

Gillespie direct method: Unavailable
Stochastic execution is not implemented in this Nendera release.

Steady-state solve: Unavailable
Steady-state execution is not implemented in this Nendera release.

Preset and exact settings

Preset

Balanced for the current supported ODE models. Moderate compute cost. Deterministic: repeated runs with the same inputs use the same arithmetic order. Use for an initial time-course check and routine comparisons.

Fixed integration step

Numerical convergence or fit quality is not biological validation. Event handling, stochastic seeds, and steady-state execution remain unavailable until implemented.